Thank you!

You can use logos instead of text, but you need to know how to replace the text with your logo masks in the custom layers of E3D. Or you can duplicate the last placeholder with the logo and use that. You basically would need to know a bit how the custom Layers on E3D work and how to replace them.
Please keep in mind that you need to have Element 3D V2, previous version won’t work (like 1.6 or lower). And Optical Flares is another plugin that doesn’t come with AE. Both Optical Flares and E3D V2 can be found on http://www.videocopilot.net/
Thank you!